PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001001.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 160aa    MW: 17860.1 Da    PI: 9.7121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001001.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.36.7e-2828342128
                      NAM  42 vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmhe 125
                              ++PwdLp    +++ e yfFs r+ ++    r +rat sgyWkatgkdk+++++   + lvg+kktLvfykg+ ++g+ktdW+mhe
  Itr_sc001001.1_g00002.1   2 SDPWDLP---GGSDGERYFFSMREVRN----RCSRATLSGYWKATGKDKKIVVSgeAQGLVGIKKTLVFYKGKPSNGSKTDWMMHE 80 
                              59*****...4467799*****98864....99********************8544455************************** PP

                      NAM 126 yrl 128
                              yrl
  Itr_sc001001.1_g00002.1  81 YRL 83 
                              *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.2771101IPR003441NAC domain
SuperFamilySSF1019419.68E-332101IPR003441NAC domain
PfamPF023651.0E-14483IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSDPWDLPGG SDGERYFFSM REVRNRCSRA TLSGYWKATG KDKKIVVSGE AQGLVGIKKT  60
LVFYKGKPSN GSKTDWMMHE YRLGDIPQPQ ANWVLCRIFL KKRGGERSRA ASLIPTFRDF  120
FASERADLNL APASSSSSRS SSVTESCNYQ TSDHQEATSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-22310758171NAC domain-containing protein 19
4dul_A2e-22310758171NAC domain-containing protein 19
1ut7_B2e-22310758171NO APICAL MERISTEM PROTEIN
1ut7_A2e-22310758171NO APICAL MERISTEM PROTEIN
1ut4_B2e-22310758171NO APICAL MERISTEM PROTEIN
1ut4_A2e-22310758171NO APICAL MERISTEM PROTEIN
3swp_D2e-22310761174NAC domain-containing protein 19
3swp_C2e-22310761174NAC domain-containing protein 19
3swp_B2e-22310761174NAC domain-containing protein 19
3swp_A2e-22310761174NAC domain-containing protein 19
3swm_D2e-22310761174NAC domain-containing protein 19
3swm_C2e-22310761174NAC domain-containing protein 19
3swm_B2e-22310761174NAC domain-containing protein 19
3swm_A2e-22310761174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086848.11e-57PREDICTED: NAC transcription factor 25
SwissprotQ9FY933e-44NAC83_ARATH; NAC domain-containing protein 83
TrEMBLS5XG867e-54S5XG86_CAMSI; NAC transcription factor
STRINGPOPTR_0001s13380.15e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-44NAC domain containing protein 83